
Product sheet

Quickly align and analyze hundreds of amino acid or DNA sequences to uncover similarities, differences, and key insights.
Share alignment results directly with colleagues so everyone can review and interpret the data together.
Run multiple sequence alignments within the same platform you use for the rest of your research, keeping everything connected and organized.

Benchling’s sequence alignment is unified with other molecular biology tools, so you can do everything in one place.
Align sequences alongside the rest of your molecular biology work
Visualize and analyze results directly on the same platform
Edit sequences without switching tools or losing context

Batch hundreds of DNA, amino acid, or protein sequence alignments, unified within Benchling’s molecular biology suite.
Compare hundreds of DNA, amino acid, or protein sequences
Run alignment in batches for faster analysis
Work seamlessly within the same platform for design, editing and analysis

No more digging through folders or emails. Keep your alignments organized and accessible by sharing them directly in Benchling.
Eliminate version confusion from local files or scattered email attachments
Send colleagues a direct link to any alignment in Benchling
Give collaborators instant access to related sequence files for added context


We can look at a plant and simultaneously know not only the plasmid we used, but its exact sequence and dozens of aspects about it. This takes us from using Benchling as a plant inventory system to a fully integrated biotechnology pipeline.
Molecular Biology Scientist, Pairwise