Innovate faster with next-generation tools

Design and analyze DNA, RNA, and amino acid sequences with intelligent software that boosts throughput, enhances collaboration, and powers cutting-edge research.
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Intuitive tools for smarter molecular biology design

  • Maximize Throughput (Up Arrow) Icon

    Maximize throughput

    Design and analyze sequences at scale with bulk cloning, alignment, and translation tools.

  • Reveal More Insights (Lightbulb) Icon

    Reveal more insights

    Model and optimize sequences using the latest algorithms and in silico design tools to guide experimental work.

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    Collaborate on sequence design

    Standardize sequence analyses and registration across teams, improving hand-offs and reducing redundant work.

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Sequence design and analysis reimagined for modern R&D

Visualize sequences

Visualize sequences with clarity and context

  • Create contextual views of the biomolecules or entities you're developing

  • Choose detailed maps, including plasmid or linear formats to better visualize sequences

  • Document annotations, ORFs, primers, and restriction enzymes sites for richer context

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Design biomolecules

Simulate and design molecules with comprehensive, guided tools

  • Design primers, CRISPR gRNAs, RNAs, and mRNA molecules in silico

  • Translate, back-translate, and simulate assemblies to predict property outcomes

  • Bulk import and perform cloning workflows — restriction, Gibson, Golden Gate — with our guided Assembly Wizard tool 

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Align and analyze

Align and analyze with the latest algorithms and models 

  • Automatically annotate and compute biochemical properties for sequences and antibodies 

  • Run BLASTn/BLASTp searches and align sequences using an expanded set of algorithms

  • Predict and visualize 3D protein structures using advanced models like AlphaFold2

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Standardize registration

Standardize registration with end-to-end sequence traceability 

  • Ensure sequence uniqueness, connect DNA/RNA regions, and centralize experimental and analytical data

  • Analyze entities and regions to uncover interdependent biological relationships

  • Enable collaboration and traceability with advanced searches, version history, and permissions controls

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Benchling's molecular biology functionality is better than any we'd used before. Having a single database that aggregates all our data allows us to do better experiments, ask better questions, and solve problems quickly.
Jason Ryder

Founder & CTO, Oobli

Powering breakthroughs for over 1,300 biotechnology companies

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